BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BA0AB008D07SP1|AL425854
(782 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1259 942 0.0
3x_Contig861 371 e-102
>3x_Contig1259
Length = 4915
Score = 942 bits (475), Expect = 0.0
Identities = 475/475 (100%)
Strand = Plus / Plus
Query: 1 gatcccaacattttacaagtttatcttcgcttgctgagaacatataaggatgtctctttg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4439 gatcccaacattttacaagtttatcttcgcttgctgagaacatataaggatgtctctttg 4498
Query: 61 agatagcaatatctcgaacactcattacatgcccgattagagtaattttcaactttcccg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4499 agatagcaatatctcgaacactcattacatgcccgattagagtaattttcaactttcccg 4558
Query: 121 cagctaaatcccagattttaatggttgtatcgttgctaccagtagcaaaccattcattgt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4559 cagctaaatcccagattttaatggttgtatcgttgctaccagtagcaaaccattcattgt 4618
Query: 181 caacggggtccacgcatacacatcttacccatccagtatgaccatttattaccttactga 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4619 caacggggtccacgcatacacatcttacccatccagtatgaccatttattaccttactga 4678
Query: 241 gtttccatggtgcatgccattgcggtttataacttcgagtcttttcataacgttccatca 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4679 gtttccatggtgcatgccattgcggtttataacttcgagtcttttcataacgttccatca 4738
Query: 301 atgaaatctgctgatgtggctgttggaacactcttcgtactagttggtcgcctggttttg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4739 atgaaatctgctgatgtggctgttggaacactcttcgtactagttggtcgcctggttttg 4798
Query: 361 tggtatgtttgactaatgcttgagagctttcgtttgcaacagttttcgacacctcaacta 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4799 tggtatgtttgactaatgcttgagagctttcgtttgcaacagttttcgacacctcaacta 4858
Query: 421 attcactgtacctttctaaaacagtcttttcttgatccaggcacttctgtaacga 475
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4859 attcactgtacctttctaaaacagtcttttcttgatccaggcacttctgtaacga 4913
>3x_Contig861
Length = 2397
Score = 371 bits (187), Expect = e-102
Identities = 194/195 (99%), Gaps = 1/195 (0%)
Strand = Plus / Plus
Query: 588 tattagttgtctatcagttcgattaagtcgtgtaactctctttcatctttgtatatgtca 647
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 21 tattagttgtctatcagttcgattaagtcgtgtaa-tctctttcatctttgtatatgtca 79
Query: 648 cttcgttaacttttcataatatccatcatacaaaacggttcttttcgtttcttgaaaaat 707
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 80 cttcgttaacttttcataatatccatcatacaaaacggttcttttcgtttcttgaaaaat 139
Query: 708 ttcgagctcatctcatctcatctcatcacattgaagcagaagtcagttgttcaaatctgg 767
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 140 ttcgagctcatctcatctcatctcatcacattgaagcagaagtcagttgttcaaatctgg 199
Query: 768 aagctgcgcttctta 782
|||||||||||||||
Sbjct: 200 aagctgcgcttctta 214
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6542
Number of Sequences: 1807
Number of extensions: 6542
Number of successful extensions: 472
Number of sequences better than 1.0e-20: 2
length of query: 782
length of database: 10,358,551
effective HSP length: 16
effective length of query: 766
effective length of database: 10,329,639
effective search space: 7912503474
effective search space used: 7912503474
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)